PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC29822_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 200aa    MW: 22496.3 Da    PI: 4.5451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC29822_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-172270355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++++g
  RrC29822_p1 22 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALSIKG 70
                 89999888.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-112170IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-202178IPR016177DNA-binding domain
SMARTSM003804.2E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103222.6822178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-302179IPR001471AP2/ERF domain
PRINTSPR003672.9E-102233IPR001471AP2/ERF domain
CDDcd000183.25E-212280No hitNo description
PRINTSPR003672.9E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVASDTERSS IKKKKETSTV VYRGARMRSW GKWVSEIREP RKKSRIWLGT FPTAEMAARA  60
HDAAALSIKG SSTILNFPEL SDSLPRPVSL SPADIQAAAT KAAFMNIKTL SLHLEDEPPS  120
PTRCETETSE EKASPQSPST LSEELGEIVE LPTLDNELKK DLALFDSLEG LDWMPPWLEA  180
TQEEFTYPLF QESLWNYEYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-162278360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-162278663ATERF1
3gcc_A4e-162278663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747097.11e-102PREDICTED: ethylene-responsive transcription factor ERF042-like
SwissprotQ52QU15e-77ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A0D3C2461e-102A0A0D3C246_BRAOL; Uncharacterized protein
TrEMBLA0A078CJY11e-102A0A078CJY1_BRANA; BnaC04g38070D protein
STRINGBra034273.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.16e-68ERF family protein